Index of Neuroimaging Software
This is an incomplete list of the neuroimaging software that is available on BlueBEAR. The links in the 'Toolbox' column follow to CHBH-on-BEAR examples and the 'Bear Apps' links go to the module specifications provided by BEAR.
| Toolbox | GUI App | Bear Apps Modules | Notes |
|---|---|---|---|
| FSL | N/A | Bear Apps FSL | Pip install modules via venv |
| Python | JupyterLab | Bear Apps Python | Bear Apps or pip/venv |
| MNE-Python | JupyterLab | Bear Apps MNE | Bear Apps or pip/venv |
| Matlab | MatLab | Bear Apps MatLab | |
| Fieldtrip | MatLab | None | Load within MatLab script |
| EEGLab | MatLab | None | Load within MatLab script |
| SPM | MatLab | None | Load within MatLab script |
| R | Rstudio | Bear Apps R | |
| Freesurfer | N/A | Bear Apps Freesurfer |